sohstationviewer/view/db_config/param_dialog.py

@@ -5,9 +5,9 @@ NOTE: Cannot remove or change params that are already used for channels.
 """
 from typing import List
 
-from PySide2 import QtWidgets, QtCore
-from PySide2.QtCore import Qt
-from PySide2.QtWidgets import QComboBox, QWidget
+from PySide6 import QtWidgets, QtCore
+from PySide6.QtCore import Qt
+from PySide6.QtWidgets import QComboBox, QWidget
 
 from sohstationviewer.conf.constants import ColorMode, ALL_COLOR_MODES
 from sohstationviewer.view.util.plot_func_names import plot_functions

sohstationviewer/view/file_information/file_info_widget.py

-from PySide2 import QtCore
-from PySide2.QtGui import (
+from PySide6 import QtCore
+from PySide6.QtGui import (
     QContextMenuEvent, QGuiApplication, QKeySequence,
-    QKeyEvent,
+    QKeyEvent, QAction
 )
-from PySide2.QtWidgets import QListWidget, QMenu, QAction
+from PySide6.QtWidgets import QListWidget, QMenu
 
 
 class FileInfoWidget(QListWidget):
@@ -27,7 +27,7 @@ class FileInfoWidget(QListWidget):
 
         menu.addAction(copy_action)
         menu.addAction(select_all_action)
-        menu.exec_(event.globalPos())
+        menu.exec(event.globalPos())
 
     def keyPressEvent(self, event: QKeyEvent) -> None:
         if event.matches(QKeySequence.Copy):

sohstationviewer/view/file_information/get_file_information.py

@@ -28,8 +28,11 @@ def extract_data_set_info(data_obj: Union[GeneralData, RT130, MSeed],
     """
 
     data_set_info = {}
-    sources_read = data_obj.dir
-    data_set_info['Sources Read'] = sources_read.name
+    folders = (data_obj.list_of_rt130_paths
+               if data_obj.list_of_dir == [''] else data_obj.list_of_dir)
+
+    sources_read = ', '.join([dir.name for dir in folders])
+    data_set_info['Sources Read'] = sources_read
 
     data_type = data_obj.data_type
     data_set_info['Data Type'] = data_type

sohstationviewer/view/file_list_widget.py

-from PySide2 import QtWidgets
+from PySide6 import QtWidgets
 
 
 class FileListItem(QtWidgets.QListWidgetItem):

sohstationviewer/view/help_view.py

@@ -2,8 +2,8 @@ import sys
 from pathlib import Path
 from typing import Tuple, Callable, Union, List, Dict
 
-from PySide2 import QtCore, QtGui, QtWidgets
-from PySide2.QtWidgets import QStyle
+from PySide6 import QtCore, QtGui, QtWidgets
+from PySide6.QtWidgets import QStyle
 
 from sohstationviewer.view.util.functions import (
     create_search_results_file, create_table_of_content_file)
@@ -538,7 +538,7 @@ def main():
 
     wnd = HelpBrowser(home_path='../../')
     wnd.show()
-    sys.exit(app.exec_())
+    sys.exit(app.exec())
 
 
 if __name__ == '__main__':

sohstationviewer/view/main_window.py

@@ -5,10 +5,10 @@ from datetime import datetime
 from typing import List, Tuple, Union, Dict
 from pathlib import Path
 
-from PySide2 import QtCore, QtWidgets, QtGui
-from PySide2.QtCore import QSize
-from PySide2.QtGui import QFont, QPalette, QColor
-from PySide2.QtWidgets import QFrame, QListWidgetItem, QMessageBox
+from PySide6 import QtCore, QtWidgets, QtGui
+from PySide6.QtCore import QSize
+from PySide6.QtGui import QFont, QPalette, QColor
+from PySide6.QtWidgets import QFrame, QListWidgetItem, QMessageBox
 
 from sohstationviewer.model.data_loader import DataLoader
 from sohstationviewer.model.general_data.general_data import \
@@ -60,7 +60,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
         """
         dir_names: list of absolute paths of data sets
         """
-        self.dir_names: List[Path] = []
+        self.list_of_dir: List[Path] = []
         """
         current_dir: the current main data directory
         """
@@ -277,7 +277,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             front.
         """
         try:
-            self.read_from_file_list()
+            self.get_file_list()
         except Exception as e:
             msg = f"{str(e)}!!!\n\nDo you want to continue?"
             result = QtWidgets.QMessageBox.question(
@@ -286,7 +286,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             if result == QtWidgets.QMessageBox.No:
                 return
         try:
-            win = ChannelPreferDialog(self, self.dir_names)
+            win = ChannelPreferDialog(self, self.list_of_dir)
             win.show()
         except DialogAlreadyOpenedError:
             ChannelPreferDialog.current_instance.activateWindow()
@@ -393,7 +393,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
         fd = QtWidgets.QFileDialog(self)
         fd.setFileMode(QtWidgets.QFileDialog.Directory)
         fd.setDirectory(self.curr_dir_line_edit.text())
-        fd.exec_()
+        fd.exec()
         try:
             new_path = fd.selectedFiles()[0]
             self.set_current_directory(new_path)
@@ -470,13 +470,13 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
         return (self.pref_soh_list
                 if not self.all_soh_chans_check_box.isChecked() else [])
 
-    def read_from_file_list(self):
+    def get_file_list(self):
         """
         Read from self.open_files_list to identify
             self.dir_names/self.selected_rt130_paths.
         self.data_type is identified here too.
         """
-        self.dir_names = ['']
+        self.list_of_dir = ['']
         self.selected_rt130_paths = []
         root_dir = Path(self.curr_dir_line_edit.text())
         if self.rt130_das_dict != {}:
@@ -494,28 +494,29 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             # displayed in File List box. The current dir (root_dir) will be
             # the only one of the selected dir for user to start processing
             # from.
-            self.dir_names = [root_dir]
+            self.list_of_dir = [root_dir]
             if self.data_radio_button.isEnabled():
                 # In case of Baler's data, there will be 2 data folders for
                 # user to select from, data/ and sdata/. The radio buttons
                 # data and sdata allow user to select from Main Window.
                 if self.data_radio_button.isChecked():
-                    self.dir_names = [root_dir.joinpath('data')]
+                    self.list_of_dir = [root_dir.joinpath('data')]
                 else:
-                    self.dir_names = [root_dir.joinpath('sdata')]
+                    self.list_of_dir = [root_dir.joinpath('sdata')]
         else:
             # When "From Data Card" checkbox is checked, sub directories of the
             # current dir (root_dir) will be displayed in File List box.
             # User can select one or more sub-directories to process from.
-            self.dir_names = [root_dir.joinpath(item.text())
-                              for item in self.open_files_list.selectedItems()]
-            if self.dir_names == []:
+            self.list_of_dir = [
+                root_dir.joinpath(item.text())
+                for item in self.open_files_list.selectedItems()]
+            if self.list_of_dir == []:
                 msg = "No directories have been selected."
                 raise Exception(msg)
 
         if self.rt130_das_dict == {}:
             self.data_type, self.is_multiplex = detect_data_type(
-                self.dir_names)
+                self.list_of_dir)
 
     def clear_plots(self):
         self.plotting_widget.clear()
@@ -601,7 +602,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             pass
 
         try:
-            self.read_from_file_list()
+            self.get_file_list()
         except Exception as e:
             if 'no known data detected' in str(e):
                 msgbox = QtWidgets.QMessageBox()
@@ -609,7 +610,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
                 msgbox.setText(str(e))
                 msgbox.addButton(QtWidgets.QMessageBox.Cancel)
                 msgbox.addButton('Continue', QtWidgets.QMessageBox.YesRole)
-                result = msgbox.exec_()
+                result = msgbox.exec()
                 if result == QtWidgets.QMessageBox.Cancel:
                     self.cancel_loading()
                     return
@@ -634,7 +635,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
                                                    QMessageBox.Abort)
             data_too_big_dialog.setDefaultButton(QMessageBox.Abort)
             data_too_big_dialog.setIcon(QMessageBox.Question)
-            ret = data_too_big_dialog.exec_()
+            ret = data_too_big_dialog.exec()
             if ret == QMessageBox.Abort:
                 self.cancel_loading()
                 return
@@ -654,15 +655,15 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
         self.end_tm = datetime.strptime(end_tm_str, TM_FORMAT).timestamp()
 
         self.gps_dialog.clear_plot()
-        self.gps_dialog.data_path = self.dir_names[0]
-        self.gps_dialog.set_export_directory(str(self.dir_names[0]))
+        self.gps_dialog.data_path = self.curr_dir_line_edit.text()
+        self.gps_dialog.set_export_directory(self.curr_dir_line_edit.text())
         self.gps_dialog.gps_points = []
 
         self.data_loader.init_loader(
             self.data_type,
             self.tracking_info_text_browser,
             self.is_multiplex,
-            self.dir_names,
+            self.list_of_dir,
             self.selected_rt130_paths,
             req_wf_chans=self.req_wf_chans,
             req_soh_chans=self.req_soh_chans,
@@ -828,8 +829,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             self.is_plotting_tps = True
             peer_plotting_widgets.append(self.tps_dlg.plotting_widget)
             self.tps_dlg.set_data(
-                self.data_type,
-                ','.join([str(d) for d in self.dir_names]))
+                self.data_type, ','.join([str(d) for d in self.list_of_dir]))
             self.tps_dlg.show()
             # The waveform and TPS plots is being stopped at the same time, so
             # we can't simply reset all flags. Instead, we use an intermediate
@@ -850,8 +850,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             # waveformPlot
             peer_plotting_widgets.append(self.waveform_dlg.plotting_widget)
             self.waveform_dlg.set_data(
-                self.data_type,
-                ','.join([str(d) for d in self.dir_names]))
+                self.data_type, ','.join([str(d) for d in self.list_of_dir]))
             self.waveform_dlg.show()
             waveform_widget = self.waveform_dlg.plotting_widget
             waveform_widget.stopped.connect(self.reset_is_plotting_waveform)
@@ -1099,7 +1098,7 @@ class MainWindow(QtWidgets.QMainWindow, UIMainWindow):
             print(f"DEVELOPING ERROR: Type of form must be 'QWidget' instead "
                   f"of '{form.__class__.__name__}'")
         if form not in self.forms_in_forms_menu:
-            action = QtWidgets.QAction(form_name, self)
+            action = QtGui.QAction(form_name, self)
             self.forms_menu.addAction(action)
             action.triggered.connect(lambda: self.raise_form(form))
             self.forms_in_forms_menu.append(form)

sohstationviewer/view/plotting/gps_plot/gps_dialog.py

@@ -5,7 +5,7 @@ import traceback
 from pathlib import Path
 from typing import List, Optional, Literal, Iterable
 
-from PySide2 import QtWidgets, QtCore
+from PySide6 import QtWidgets, QtCore
 from matplotlib.axes import Axes
 from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as Canvas
 from matplotlib.figure import Figure
@@ -326,7 +326,7 @@ class GPSDialog(QtWidgets.QWidget):
         fd = QtWidgets.QFileDialog(self)
         fd.setFileMode(QtWidgets.QFileDialog.Directory)
         fd.setDirectory(self.export_dir_textbox.text())
-        fd.exec_()
+        fd.exec()
         new_path = fd.selectedFiles()[0]
         self.set_export_directory(new_path)
 
@@ -432,4 +432,4 @@ if __name__ == '__main__':
     wnd.data_path = Path(data_path)
     wnd.show()
 
-    sys.exit(app.exec_())
+    sys.exit(app.exec())

sohstationviewer/view/plotting/plotting_widget/multi_threaded_plotting_widget.py

@@ -2,7 +2,7 @@
 
 from typing import Tuple, Union, Dict, List
 
-from PySide2 import QtCore
+from PySide6 import QtCore
 
 from sohstationviewer.model.data_type_model import DataTypeModel
 
@@ -74,7 +74,7 @@ class MultiThreadedPlottingWidget(PlottingWidget):
         :param time_ticks_total: max number of tick to show on time bar
         :param is_waveform: True if this is a WaveformWidget, otherwise False
         """
-
+        self.zoom_marker1_shown = False
         self.key = key
         self.processing_log = []  # [(message, type)]
         self.gap_bar = None

sohstationviewer/view/plotting/plotting_widget/plotting_processor.py

-from PySide2 import QtCore
+from PySide6 import QtCore
 
 from sohstationviewer.conf import constants as const
 from sohstationviewer.view.plotting.plotting_widget.plotting_processor_helper\

sohstationviewer/view/plotting/plotting_widget/plotting_widget.py

@@ -6,9 +6,9 @@ import numpy as np
 import matplotlib.text
 from matplotlib import pyplot as pl
 from matplotlib.transforms import Bbox
-from PySide2.QtCore import QTimer, Qt
-from PySide2 import QtCore, QtWidgets
-from PySide2.QtWidgets import QWidget, QApplication, QTextBrowser
+from PySide6.QtCore import QTimer, Qt
+from PySide6 import QtCore, QtWidgets
+from PySide6.QtWidgets import QWidget, QApplication, QTextBrowser
 
 from sohstationviewer.conf import constants
 from sohstationviewer.view.util.color import set_color_mode
@@ -296,9 +296,9 @@ class PlottingWidget(QtWidgets.QScrollArea):
             focus SOH tab, roll to the corresponding line.
         """
         artist = event.artist
-        ax = artist.axes
-        chan_id = ax.chan
         if isinstance(artist, pl.Line2D):
+            ax = artist.axes
+            chan_id = ax.chan
             chan_data = self.plotting_data1[chan_id]
             # list of x values of the plot
             x_list = artist.get_xdata()
@@ -650,7 +650,7 @@ class PlottingWidget(QtWidgets.QScrollArea):
             msgbox.setText(msg)
             msgbox.addButton(QtWidgets.QMessageBox.Cancel)
             msgbox.addButton('Continue', QtWidgets.QMessageBox.YesRole)
-            result = msgbox.exec_()
+            result = msgbox.exec()
             if result == QtWidgets.QMessageBox.Cancel:
                 return
             self.main_window.color_mode = self.c_mode
@@ -667,12 +667,12 @@ class PlottingWidget(QtWidgets.QScrollArea):
             msgbox.setText(msg)
             msgbox.addButton(QtWidgets.QMessageBox.Cancel)
             msgbox.addButton('Continue', QtWidgets.QMessageBox.YesRole)
-            result = msgbox.exec_()
+            result = msgbox.exec()
             if result == QtWidgets.QMessageBox.Cancel:
                 return
         save_plot_dlg = SavePlotDialog(
             self.parent, self.main_window, default_name)
-        save_plot_dlg.exec_()
+        save_plot_dlg.exec()
         save_file_path = save_plot_dlg.save_file_path
         if save_file_path is None:
             return

sohstationviewer/view/plotting/time_power_squared_dialog.py

@@ -3,7 +3,7 @@ from math import sqrt
 from typing import List, Tuple, Union
 
 import numpy as np
-from PySide2 import QtWidgets, QtCore
+from PySide6 import QtWidgets, QtCore
 
 from sohstationviewer.conf import constants as const
 from sohstationviewer.controller.plotting_data import (
@@ -86,6 +86,7 @@ class TimePowerSquaredWidget(plotting_widget.PlottingWidget):
         :param start_tm: requested start time to read
         :param end_tm: requested end time to read
         """
+        self.zoom_marker1_shown = False
         self.is_working = True
         self.set_key = key
         self.plotting_data1 = d_obj.waveform_data[key]

sohstationviewer/view/plotting/time_power_squared_processor.py

 from typing import Dict, Optional, List
 
 import numpy as np
-from PySide2 import QtCore
+from PySide6 import QtCore
 
 from sohstationviewer.view.plotting.time_power_squared_helper import \
     get_tps_for_discontinuous_data

sohstationviewer/view/plotting/waveform_dialog.py

 # Drawing waveform and mass position
 
 from typing import Tuple, Union, Dict
-from PySide2 import QtCore, QtWidgets
+from PySide6 import QtCore, QtWidgets
 
 from sohstationviewer.model.data_type_model import DataTypeModel
 

sohstationviewer/view/plotting/waveform_processor.py

 from typing import List, Dict
 
-from PySide2 import QtCore
+from PySide6 import QtCore
 from obspy import UTCDateTime
 from obspy.core import Trace
 

sohstationviewer/view/save_plot_dialog.py

@@ -4,8 +4,8 @@ import os
 from pathlib import Path
 from typing import Union, Optional
 
-from PySide2 import QtWidgets, QtCore, QtGui
-from PySide2.QtWidgets import QApplication, QWidget, QDialog
+from PySide6 import QtWidgets, QtCore, QtGui
+from PySide6.QtWidgets import QApplication, QWidget, QDialog
 
 from sohstationviewer.conf import constants
 
@@ -93,7 +93,7 @@ class SavePlotDialog(QDialog):
         fd = QtWidgets.QFileDialog(self)
         fd.setFileMode(QtWidgets.QFileDialog.Directory)
         fd.setDirectory(self.save_dir_textbox.text())
-        fd.exec_()
+        fd.exec()
         new_path = fd.selectedFiles()[0]
         self.save_dir_textbox.setText(new_path)
         self.save_dir_path = new_path
@@ -133,7 +133,7 @@ if __name__ == '__main__':
     save_path = '/Users/ldam/Documents/GIT/sohstationviewer/tests/test_data/Q330-sample'  # noqa: E501
     test = SavePlotDialog(None, 'test_plot')
     test.set_save_directory(save_path)
-    test.exec_()
+    test.exec()
     print("dpi:", test.dpi)
     print("save file path:", test.save_file_path)
-    sys.exit(app.exec_())
+    sys.exit(app.exec())

sohstationviewer/view/search_message/highlight_delegate.py

@@ -2,8 +2,8 @@
 Credit: https://stackoverflow.com/questions/53353450/how-to-highlight-a-words-in-qtablewidget-from-a-searchlist  # noqa
 """
 from typing import List, Dict
-from PySide2 import QtCore, QtGui, QtWidgets
-from PySide2.QtGui import QPen, QTextCursor, QTextCharFormat, QColor
+from PySide6 import QtCore, QtGui, QtWidgets
+from PySide6.QtGui import QPen, QTextCursor, QTextCharFormat, QColor
 
 
 class HighlightDelegate(QtWidgets.QStyledItemDelegate):

sohstationviewer/view/search_message/search_message_dialog.py

@@ -3,8 +3,8 @@ import os
 from pathlib import PosixPath, Path
 from typing import Dict, List, Tuple, Callable, Union, Optional
 
-from PySide2 import QtGui, QtCore, QtWidgets
-from PySide2.QtWidgets import QStyle
+from PySide6 import QtGui, QtCore, QtWidgets
+from PySide6.QtWidgets import QStyle
 
 from sohstationviewer.view.search_message.highlight_delegate import (
     HighlightDelegate)
@@ -705,7 +705,7 @@ def main():
     wnd.show()
     # wnd.show_log_entry_from_data_index(10)
 
-    sys.exit(app.exec_())
+    sys.exit(app.exec())
 
 
 if __name__ == '__main__':

sohstationviewer/view/select_buttons_dialog.py

@@ -2,7 +2,7 @@ import sys
 import platform
 import os
 
-from PySide2 import QtWidgets, QtCore
+from PySide6 import QtWidgets, QtCore
 from functools import partial
 
 
@@ -62,7 +62,7 @@ if __name__ == '__main__':
     test = SelectButtonDialog(None, "Testing result from buttons",
                               ['test01', 'test02', 'test03',
                                'test11', 'test12', 'test13'])
-    test.exec_()
+    test.exec()
 
     print("return Code:", test.ret)
-    sys.exit(app.exec_())
+    sys.exit(app.exec())

sohstationviewer/view/ui/about_ui_qtdesigner.py

@@ -8,7 +8,7 @@
 #
 # WARNING! All changes made in this file will be lost!
 
-from PySide2 import QtCore, QtGui, QtWidgets
+from PySide6 import QtCore, QtGui, QtWidgets
 
 class Ui_About(object):
     def setupUi(self, About):

sohstationviewer/view/ui/calendar_ui_qtdesigner.py

@@ -8,7 +8,7 @@
 #
 # WARNING! All changes made in this file will be lost!
 
-from PySide2 import QtCore, QtWidgets
+from PySide6 import QtCore, QtWidgets
 
 from sohstationviewer.view.calendar.calendar_widget import CalendarWidget