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Software Public
PASSOFT
SOHViewer
Commits
45a8590d
Commit
45a8590d
authored
2 years ago
by
Kien Le
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Add tests for saveData2File
parent
2de3fcbf
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1 merge request
!27
Draft: Add tests for functions in handling_data.py
Changes
1
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tests/test_model/test_handling_data.py
+88
-3
88 additions, 3 deletions
tests/test_model/test_handling_data.py
with
88 additions
and
3 deletions
tests/test_model/test_handling_data.py
+
88
−
3
View file @
45a8590d
...
...
@@ -2,11 +2,12 @@ from pathlib import Path
import
tempfile
from
math
import
isclose
from
copy
import
copy
as
shallow_copy
import
tracemalloc
from
unittest
import
TestCase
from
unittest
import
TestCase
,
expectedFailure
from
unittest.mock
import
patch
from
obspy.core
import
Stream
,
read
as
read_ms
from
obspy.core
import
Trace
,
read
as
read_ms
import
numpy
as
np
from
sohstationviewer.model.handling_data
import
(
...
...
@@ -18,6 +19,7 @@ from sohstationviewer.model.handling_data import (
readWaveformReftek
,
readASCII
,
readText
,
saveData2File
,
)
from
sohstationviewer.model.reftek.from_rt2ms.core
import
Reftek130
...
...
@@ -420,6 +422,7 @@ class TestReadASCII(TestCase):
'
Quanterra Packet Baler Model 14 Restart. Version 2.26
'
)
@expectedFailure
def
test_trace_does_not_contain_log_data
(
self
):
raise
NotImplementedError
(
self
.
test_trace_does_not_contain_log_data
.
__qualname__
)
...
...
@@ -478,4 +481,86 @@ class TestReadText(TestCase):
with
self
.
assertRaises
(
FileNotFoundError
):
readText
(
str
(
non_existent_file
),
non_existent_file
.
name
,
self
.
text_logs
)
\ No newline at end of file
self
.
text_logs
)
class
TestSaveData2File
(
TestCase
):
def
setUp
(
self
)
->
None
:
self
.
temp_dir
=
tempfile
.
TemporaryDirectory
()
self
.
time_data
=
'
timedata
'
self
.
station_id
=
'
station
'
self
.
channel_id
=
'
channel
'
self
.
trace_idx
=
0
self
.
trace_size
=
100
tracemalloc
.
start
()
# We do not need the metadata of a data set (stored in Trace.stats), so
# we can create a trace without reading any data set. This approach
# allows us to create a trace that contains a large amount of data
# without having to store a large data set in the GitLab server.
self
.
trace
=
Trace
(
np
.
ones
(
self
.
trace_size
))
# The current implementation stores the data in a memmap that contains
# 64-bit integers, and so each data point has a size of 8 bytes in the
# memmap
self
.
data_point_size
=
8
def
tearDown
(
self
)
->
None
:
self
.
temp_dir
.
cleanup
()
tracemalloc
.
stop
()
def
test_file_created
(
self
):
mem_file_name
=
saveData2File
(
self
.
temp_dir
.
name
,
self
.
time_data
,
self
.
station_id
,
self
.
channel_id
,
self
.
trace
,
self
.
trace_idx
,
self
.
trace_size
)
self
.
assertTrue
(
mem_file_name
.
is_file
())
expected_mem_file_name
=
"
station-channel-timedata-0
"
self
.
assertEqual
(
mem_file_name
.
name
,
expected_mem_file_name
)
memmap_size
=
self
.
data_point_size
*
self
.
trace_size
self
.
assertEqual
(
mem_file_name
.
stat
().
st_size
,
memmap_size
)
@patch.object
(
np
,
'
memmap
'
)
def
test_memmap_called
(
self
,
mock_memmap
):
saveData2File
(
self
.
temp_dir
.
name
,
self
.
time_data
,
self
.
station_id
,
self
.
channel_id
,
self
.
trace
,
self
.
trace_idx
,
self
.
trace_size
)
self
.
assertTrue
(
mock_memmap
.
called
)
@expectedFailure
def
test_memory_freed
(
self
):
# This test works by calculating the amount of memory freed after
# saveData2File is called. Because there are operations happening
# between the memory being freed and the calculation, the calculated
# amount of memory won't be exact. Fixing this would involve removing
# all the aforementioned intermediate operations, which is (very
# likely) impossible and does not provide much value due to the actual
# deviation being small (consistently at most 1000 bytes).
# The difference between the calculated amount of freed memory and the
# size of the memmap is around 1000 bytes, we want data that is at
# least an order of magnitude bigger to ensure that this difference is
# obvious in our calculation.
self
.
trace_size
=
10000
self
.
trace
=
Trace
(
np
.
ones
(
self
.
trace_size
))
memmap_size
=
self
.
trace_size
*
self
.
data_point_size
current_mem_used
=
tracemalloc
.
get_traced_memory
()[
0
]
saveData2File
(
self
.
temp_dir
.
name
,
self
.
time_data
,
self
.
station_id
,
self
.
channel_id
,
self
.
trace
,
self
.
trace_idx
,
self
.
trace_size
)
freed_mem
=
current_mem_used
-
tracemalloc
.
get_traced_memory
()[
0
]
freed_mem_max_error
=
1000
self
.
assertTrue
(
isclose
(
memmap_size
,
freed_mem
,
abs_tol
=
freed_mem_max_error
))
def
test_empty_trace
(
self
):
self
.
trace_size
=
0
self
.
trace
=
Trace
(
np
.
ones
(
self
.
trace_size
))
with
self
.
assertRaises
(
ValueError
):
saveData2File
(
self
.
temp_dir
.
name
,
self
.
time_data
,
self
.
station_id
,
self
.
channel_id
,
self
.
trace
,
self
.
trace_idx
,
self
.
trace_size
)
\ No newline at end of file
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