Initial commit, 2018-05-22 dthomas

.editorconfig

+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+[LICENSE]
+insert_final_newline = false
+
+[Makefile]
+indent_style = tab

.gitignore

+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
+# virtualenv
+.venv
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+#pycharm
+.idea/
+
+.DS_Store

.gitlab/issue_templates/Bug.md

+* ckMseed version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```

AUTHORS.rst

+=======
+Credits
+=======
+
+Development Lead
+----------------
+
+* IRIS PASSCAL <software-support@passcal.nmt.edu>
+
+Contributors
+------------
+
+None yet. Why not be the first?

CONTRIBUTING.rst

+.. highlight:: shell
+
+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every little bit
+helps, and credit will always be given.
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://git.passcal.nmt.edu/passoft/ckmseed/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
+wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Write Documentation
+~~~~~~~~~~~~~~~~~~~
+
+ckMseed could always use more documentation, whether as part of the
+official ckMseed docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://git.passcal.nmt.edu/passoft/ckmseed/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that contributions
+  are welcome :)
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `ckmseed` for local development.
+
+1. Cone the `ckmseed` repo::
+
+    $ git clone https://git.passcal.nmt.edu/passoft/ckmseed.git
+
+3. Install your local copy::
+
+    $ python setup.py develop
+
+4. Create a branch for local development::
+
+    $ git checkout -b name-of-your-bugfix-or-feature
+
+   Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass the
+   tests::
+
+    $ python setup.py test
+6. Commit your changes and push your branch to GitHub::
+
+    $ git add .
+    $ git commit -m "Your detailed description of your changes."
+    $ git push origin name-of-your-bugfix-or-feature
+
+7. Submit a merge request through the Gitlab website.
+
+Pull Request Guidelines
+-----------------------
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+   your new functionality into a function with a docstring, and add the
+   feature to the list in README.rst.
+3. The pull request should work for Python 2.7
+
+Tips
+----
+
+To run a subset of tests::
+    $ python -m unittest tests.test_ckmseed
+
+Deploying
+---------
+
+A reminder for the maintainers on how to deploy.
+Make sure all your changes are committed (including an entry in HISTORY.rst).
+Then run::
+
+$ git push
+$ git push --tags
+

HISTORY.rst

+=======
+History
+=======
+
+2009.188 (2018-05-22)
+------------------
+
+* First release on new build system.

LICENSE

+GNU GENERAL PUBLIC LICENSE
+                      Version 3, 29 June 2007
+
+    Find and review MSEED files.
+    Copyright (C) 2018  IRIS PASSCAL
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
+

MANIFEST.in

+include AUTHORS.rst
+include CONTRIBUTING.rst
+include HISTORY.rst
+include LICENSE
+include README.rst
+
+recursive-include tests *
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+
+recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif

Makefile

+.PHONY: clean clean-test clean-pyc clean-build docs help
+.DEFAULT_GOAL := help
+
+define BROWSER_PYSCRIPT
+import os, webbrowser, sys
+
+try:
+	from urllib import pathname2url
+except:
+	from urllib.request import pathname2url
+
+webbrowser.open("file://" + pathname2url(os.path.abspath(sys.argv[1])))
+endef
+export BROWSER_PYSCRIPT
+
+define PRINT_HELP_PYSCRIPT
+import re, sys
+
+for line in sys.stdin:
+	match = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line)
+	if match:
+		target, help = match.groups()
+		print("%-20s %s" % (target, help))
+endef
+export PRINT_HELP_PYSCRIPT
+
+BROWSER := python -c "$$BROWSER_PYSCRIPT"
+
+help:
+	@python -c "$$PRINT_HELP_PYSCRIPT" < $(MAKEFILE_LIST)
+
+clean: clean-build clean-pyc clean-test ## remove all build, test, coverage and Python artifacts
+
+clean-build: ## remove build artifacts
+	rm -fr build/
+	rm -fr dist/
+	rm -fr .eggs/
+	find . -name '*.egg-info' -exec rm -fr {} +
+	find . -name '*.egg' -exec rm -f {} +
+
+clean-pyc: ## remove Python file artifacts
+	find . -name '*.pyc' -exec rm -f {} +
+	find . -name '*.pyo' -exec rm -f {} +
+	find . -name '*~' -exec rm -f {} +
+	find . -name '__pycache__' -exec rm -fr {} +
+
+clean-test: ## remove test and coverage artifacts
+	rm -fr .tox/
+	rm -f .coverage
+	rm -fr htmlcov/
+	rm -fr .pytest_cache
+
+lint: ## check style with flake8
+	flake8 ckmseed tests
+
+test: ## run tests quickly with the default Python
+	python setup.py test
+
+
+test-all: ## run tests on every Python version with tox
+	tox
+
+coverage: ## check code coverage quickly with the default Python
+	coverage run --source ckmseed setup.py test
+	coverage report -m
+	coverage html
+	$(BROWSER) htmlcov/index.html
+
+docs: ## generate Sphinx HTML documentation, including API docs
+	rm -f docs/ckmseed.rst
+	rm -f docs/modules.rst
+	sphinx-apidoc -o docs/ ckmseed
+	$(MAKE) -C docs clean
+	$(MAKE) -C docs html
+	$(BROWSER) docs/_build/html/index.html
+
+servedocs: docs ## compile the docs watching for changes
+	watchmedo shell-command -p '*.rst' -c '$(MAKE) -C docs html' -R -D .
+
+release: dist ## package and upload a release
+	twine upload dist/*
+
+dist: clean ## builds source and wheel package
+	python setup.py sdist
+	python setup.py bdist_wheel
+	ls -l dist
+
+install: clean ## install the package to the active Python's site-packages
+	python setup.py install

README.rst

+=======
+ckMseed
+=======
+
+
+Find and review MSEED files.
+
+
+* Free software: GNU General Public License v3 (GPLv3)
+
+
+
+Features
+--------
+
+* TODO
+
+Credits
+-------
+
+This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.
+
+.. _Cookiecutter: https://github.com/audreyr/cookiecutter
+.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage

ckMseed/Makefile

+# Requires sourcing the setup information in setup_passoft
+
+EXEC	=	ckMseed
+PYEXEC	=	ckMseed.py
+
+MODLIB	=	lib/python/$(EXEC)
+
+all:
+
+install:
+		@$(PASSINSTALL) -d -m 0755 $(PASSCAL)/$(MODLIB)
+		@$(PASSCHEXE) $(PYEXEC)
+		@$(PASSCP) $(PYEXEC) $(PASSCAL)/$(MODLIB)
+		@$(PASSCHEXE) $(EXEC)
+		@$(PASSCP) $(EXEC) $(PASSCAL)/bin
+#		@$(PASSINSTALL) -d -m 0755 $(PASSCAL)/man/manl
+#		@$(PASSCP) $(EXEC).man $(PASSCAL)/man/manl/$(EXEC).l
+
+installl:
+		@$(PASSINSTALL) -d -m 0755 $(PASSOFT)/$(MODLIB)
+		@$(PASSCHEXE) $(PYEXEC)
+		@$(PASSCP) $(PYEXEC) $(PASSOFT)/$(MODLIB)
+		@$(PASSCHEXE) $(EXEC)
+		@$(PASSCP) $(EXEC) $(PASSOFT)/bin/$(EXEC)
+
+tarsrc:
+		@$(PASSINSTALL) -d -m 0755 $(PASSCAL)/tar
+		@$(PASSCP) $(PASSOFT)/src/setup_passoft .
+#		@$(PASSTAR) cf $(EXEC)src.tar setup_passoft Makefile \
+#			$(EXEC) *.man *.py
+		@$(PASSTAR) cf $(EXEC)src.tar setup_passoft Makefile \
+			$(EXEC) *.py
+		@$(PASSCP) $(EXEC)src.tar $(PASSCAL)/tar
+
+tarbin:
+		@$(PASSINSTALL) -d -m 0755 $(PASSCAL)/tar
+		@$(PASSCP) $(PASSOFT)/src/setup_passoft .
+#		@$(PASSTAR) cf $(EXEC)bin.tar setup_passoft Makefile \
+#			$(EXEC) *.man *py
+		@$(PASSTAR) cf $(EXEC)bin.tar setup_passoft Makefile \
+			$(EXEC) *py
+		@$(PASSCP) $(EXEC)bin.tar $(PASSCAL)/tar
+
+clean:
+		@$(PASSRM) *~
+
+uninstall:
+		@$(PASSRM) $(PASSCAL)/bin/$(EXEC)
+		@$(PASSRM) -r $(PASSCAL)/$(MODLIB)
+#		@$(PASSRM) $(PASSCAL)/man/manl/$(EXEC).l

ckMseed/__init__.py

+# -*- coding: utf-8 -*-
+
+"""Top-level package for ckMseed."""
+
+__author__ = """IRIS PASSCAL"""
+__email__ = 'software-support@passcal.nmt.edu'
+__version__ = '2009.188'

ckMseed/ckMseed

+#!/bin/sh
+#    Launch ckMseed.py
+
+if [ ! -z "${PASSCAL}" ]
+then
+   PYTHON=${PASSCAL}/other/bin/picpython
+   export PYTHON   
+
+   PYTHONPATH=${PASSCAL}/lib:${PASSCAL}/lib/python/libtrace
+   export PYTHONPATH
+else
+   echo "PASSCAL environment variable not set! Cannot continue."
+fi
+
+if [ $# = 0 ]
+then
+   echo "Starting ckMseed..."
+   ${PYTHON} ${PASSCAL}/lib/python/ckMseed/ckMseed.py $* &
+   exit 0
+fi
+if [ $1 = "-#" ]
+then
+   ${PYTHON} ${PASSCAL}/lib/python/ckMseed/ckMseed.py $*
+   exit 0
+fi
+echo "Starting ckMseed..."
+   ${PYTHON} ${PASSCAL}/lib/python/ckMseed/ckMseed.py $* &
+

docs/Makefile

+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS    =
+SPHINXBUILD   = python -msphinx
+SPHINXPROJ    = ckmseed
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/authors.rst

+.. include:: ../AUTHORS.rst

docs/conf.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# ckmseed documentation build configuration file, created by
+# sphinx-quickstart on Fri Jun  9 13:47:02 2017.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+# If extensions (or modules to document with autodoc) are in another
+# directory, add these directories to sys.path here. If the directory is
+# relative to the documentation root, use os.path.abspath to make it
+# absolute, like shown here.
+#
+import os
+import sys
+sys.path.insert(0, os.path.abspath('..'))
+
+import ckmseed
+
+# -- General configuration ---------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = '.rst'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'ckMseed'
+copyright = u"2018, IRIS PASSCAL"
+author = u"IRIS PASSCAL"
+
+# The version info for the project you're documenting, acts as replacement
+# for |version| and |release|, also used in various other places throughout
+# the built documents.
+#
+# The short X.Y version.
+version = ckmseed.__version__
+# The full version, including alpha/beta/rc tags.
+release = ckmseed.__version__
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = False
+
+
+# -- Options for HTML output -------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'alabaster'
+
+# Theme options are theme-specific and customize the look and feel of a
+# theme further.  For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+
+# -- Options for HTMLHelp output ---------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'ckmseeddoc'
+
+
+# -- Options for LaTeX output ------------------------------------------
+
+latex_elements = {
+    # The paper size ('letterpaper' or 'a4paper').
+    #
+    # 'papersize': 'letterpaper',
+
+    # The font size ('10pt', '11pt' or '12pt').
+    #
+    # 'pointsize': '10pt',
+
+    # Additional stuff for the LaTeX preamble.
+    #
+    # 'preamble': '',
+
+    # Latex figure (float) alignment
+    #
+    # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass
+# [howto, manual, or own class]).
+latex_documents = [
+    (master_doc, 'ckmseed.tex',
+     u'ckMseed Documentation',
+     u'IRIS PASSCAL', 'manual'),
+]
+
+
+# -- Options for manual page output ------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+    (master_doc, 'ckmseed',
+     u'ckMseed Documentation',
+     [author], 1)
+]
+
+
+# -- Options for Texinfo output ----------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+#  dir menu entry, description, category)
+texinfo_documents = [
+    (master_doc, 'ckmseed',
+     u'ckMseed Documentation',
+     author,
+     'ckmseed',
+     'One line description of project.',
+     'Miscellaneous'),
+]
+
+
+

docs/contributing.rst

+.. include:: ../CONTRIBUTING.rst

docs/history.rst

+.. include:: ../HISTORY.rst

docs/index.rst

+Welcome to ckMseed's documentation!
+======================================
+
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
+   readme
+   installation
+   usage
+   modules
+   contributing
+   authors
+   history
+
+Indices and tables
+==================
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`