From 635e202517ea8e18c2a0e7226474465956780ca4 Mon Sep 17 00:00:00 2001
From: Lloyd Carothers <lloyd@passcal.nmt.edu>
Date: Tue, 29 May 2018 17:17:22 -0600
Subject: [PATCH] Cookiecutter skeleton added.
---
AUTHORS.rst | 13 ++
CONTRIBUTING.rst | 114 ++++++++++++
HISTORY.rst | 8 +
LICENSE | 33 ++++
MANIFEST.in | 11 ++
Makefile | 89 ++++++++++
README.rst | 24 +++
cookie/nexus/.editorconfig | 21 +++
cookie/nexus/.gitignore | 107 ++++++++++++
cookie/nexus/.gitlab-ci.yml | 36 ++++
cookie/nexus/.gitlab/issue_templates/Bug.md | 15 ++
cookie/nexus/AUTHORS.rst | 13 ++
cookie/nexus/CONTRIBUTING.rst | 114 ++++++++++++
cookie/nexus/HISTORY.rst | 8 +
cookie/nexus/LICENSE | 33 ++++
cookie/nexus/MANIFEST.in | 11 ++
cookie/nexus/Makefile | 89 ++++++++++
cookie/nexus/README.rst | 24 +++
cookie/nexus/docs/Makefile | 20 +++
cookie/nexus/docs/authors.rst | 1 +
cookie/nexus/docs/conf.py | 163 ++++++++++++++++++
cookie/nexus/docs/contributing.rst | 1 +
cookie/nexus/docs/history.rst | 1 +
cookie/nexus/docs/index.rst | 20 +++
cookie/nexus/docs/installation.rst | 51 ++++++
cookie/nexus/docs/make.bat | 36 ++++
cookie/nexus/docs/readme.rst | 1 +
cookie/nexus/docs/usage.rst | 7 +
cookie/nexus/nexus/__init__.py | 7 +
cookie/nexus/setup.cfg | 22 +++
cookie/nexus/setup.py | 56 ++++++
cookie/nexus/tests/__init__.py | 3 +
cookie/nexus/tests/test_nexus.py | 28 +++
cookie/nexus/tox.ini | 19 ++
docs/Makefile | 20 +++
docs/authors.rst | 1 +
docs/conf.py | 163 ++++++++++++++++++
docs/contributing.rst | 1 +
docs/history.rst | 1 +
docs/index.rst | 20 +++
docs/installation.rst | 51 ++++++
docs/make.bat | 36 ++++
docs/readme.rst | 1 +
docs/usage.rst | 7 +
nexus/__init__.py | 7 +
setup.cfg | 22 +++
setup.py | 56 ++++++
tests/__init__.py | 3 +
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.../XQ.16.SVC2_DB.20161390324.dataless | 0
{nexus/test => tests}/data/xml/ANDIVOLC.xml | 0
{nexus/test => tests}/data/xml/BW_GR_misc.xml | 0
{nexus/test => tests}/data/xml/BW_RJOB.xml | 0
.../test => tests}/data/xml/IM_IL31__BHZ.xml | 0
{nexus/test => tests}/data/xml/IU_ANMO_BH.xml | 0
.../data/xml/NP.crashes.analog.stage2.xml | 0
.../test => tests}/data/xml/XE_with_dl_sn.xml | 0
tests/test_nexus.py | 28 +++
tox.ini | 19 ++
184 files changed, 1635 insertions(+)
create mode 100644 AUTHORS.rst
create mode 100644 CONTRIBUTING.rst
create mode 100644 HISTORY.rst
create mode 100644 LICENSE
create mode 100644 MANIFEST.in
create mode 100644 Makefile
create mode 100644 README.rst
create mode 100644 cookie/nexus/.editorconfig
create mode 100644 cookie/nexus/.gitignore
create mode 100644 cookie/nexus/.gitlab-ci.yml
create mode 100644 cookie/nexus/.gitlab/issue_templates/Bug.md
create mode 100644 cookie/nexus/AUTHORS.rst
create mode 100644 cookie/nexus/CONTRIBUTING.rst
create mode 100644 cookie/nexus/HISTORY.rst
create mode 100644 cookie/nexus/LICENSE
create mode 100644 cookie/nexus/MANIFEST.in
create mode 100644 cookie/nexus/Makefile
create mode 100644 cookie/nexus/README.rst
create mode 100644 cookie/nexus/docs/Makefile
create mode 100644 cookie/nexus/docs/authors.rst
create mode 100755 cookie/nexus/docs/conf.py
create mode 100644 cookie/nexus/docs/contributing.rst
create mode 100644 cookie/nexus/docs/history.rst
create mode 100644 cookie/nexus/docs/index.rst
create mode 100644 cookie/nexus/docs/installation.rst
create mode 100644 cookie/nexus/docs/make.bat
create mode 100644 cookie/nexus/docs/readme.rst
create mode 100644 cookie/nexus/docs/usage.rst
create mode 100644 cookie/nexus/nexus/__init__.py
create mode 100644 cookie/nexus/setup.cfg
create mode 100644 cookie/nexus/setup.py
create mode 100644 cookie/nexus/tests/__init__.py
create mode 100644 cookie/nexus/tests/test_nexus.py
create mode 100644 cookie/nexus/tox.ini
create mode 100644 docs/Makefile
create mode 100644 docs/authors.rst
create mode 100755 docs/conf.py
create mode 100644 docs/contributing.rst
create mode 100644 docs/history.rst
create mode 100644 docs/index.rst
create mode 100644 docs/installation.rst
create mode 100644 docs/make.bat
create mode 100644 docs/readme.rst
create mode 100644 docs/usage.rst
create mode 100644 setup.cfg
create mode 100644 setup.py
create mode 100644 tests/__init__.py
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rename {nexus/test => tests}/data/alissa_fail_incorrect_extention_after_split/test-s1-2017264 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HH1.2015.248 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HH1.2015.249 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HH1.2015.250 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HH2.2015.248 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HH2.2015.249 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HH2.2015.250 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HHZ.2015.248 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HHZ.2015.249 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010.XQ..HHZ.2015.250 (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/NA010_Batch (100%)
rename {nexus/test => tests}/data/george_fail_cases/NA010_Service_Run/XQ.15.NA010.20172071523.dataless (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..CHE.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..CHN.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..CHZ.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..LOG.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..VM1.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..VM2.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/ALMO.XE..VM3.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..CHE.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..CHN.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..CHZ.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..LOG.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..VM1.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..VM2.2015.060 (100%)
rename {nexus/test => tests}/data/ms_gen/BFTO.XE..VM3.2015.060 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN1.2015.351 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN1.2015.352 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN1.2016.006 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN1.2016.007 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN2.2015.351 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN2.2015.352 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN2.2016.006 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HN2.2016.007 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HNZ.2015.351 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HNZ.2015.352 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HNZ.2016.006 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM.XQ..HNZ.2016.007 (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/NAKRM_Batch (100%)
rename {nexus/test => tests}/data/sr_change/NAKRM/XQ.15.XQ.20171911034.dataless (100%)
rename {nexus/test => tests}/data/sr_change/NANST/NANST.XQ..HN1.2016.011 (100%)
rename {nexus/test => tests}/data/sr_change/NANST/NANST.XQ..HN2.2016.011 (100%)
rename {nexus/test => tests}/data/sr_change/NANST/NANST.XQ..HNZ.2016.011 (100%)
rename {nexus/test => tests}/data/sr_change/NANST/NANST_Batch.txt (100%)
rename {nexus/test => tests}/data/sr_change/NANST/XQ.16.NANST.20171911114.dataless (100%)
rename {nexus/test => tests}/data/sr_change/XQ.16.SVC2_DB.20161390324.dataless (100%)
rename {nexus/test => tests}/data/xml/ANDIVOLC.xml (100%)
rename {nexus/test => tests}/data/xml/BW_GR_misc.xml (100%)
rename {nexus/test => tests}/data/xml/BW_RJOB.xml (100%)
rename {nexus/test => tests}/data/xml/IM_IL31__BHZ.xml (100%)
rename {nexus/test => tests}/data/xml/IU_ANMO_BH.xml (100%)
rename {nexus/test => tests}/data/xml/NP.crashes.analog.stage2.xml (100%)
rename {nexus/test => tests}/data/xml/XE_with_dl_sn.xml (100%)
create mode 100644 tests/test_nexus.py
create mode 100644 tox.ini
diff --git a/AUTHORS.rst b/AUTHORS.rst
new file mode 100644
index 00000000..82f4d5a6
--- /dev/null
+++ b/AUTHORS.rst
@@ -0,0 +1,13 @@
+=======
+Credits
+=======
+
+Development Lead
+----------------
+
+* IRIS PASSCAL <software-support@passcal.nmt.edu>
+
+Contributors
+------------
+
+None yet. Why not be the first?
diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
new file mode 100644
index 00000000..58d9d357
--- /dev/null
+++ b/CONTRIBUTING.rst
@@ -0,0 +1,114 @@
+.. highlight:: shell
+
+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every little bit
+helps, and credit will always be given.
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://git.passcal.nmt.edu/passoft/nexus/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
+wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Write Documentation
+~~~~~~~~~~~~~~~~~~~
+
+nexus could always use more documentation, whether as part of the
+official nexus docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://git.passcal.nmt.edu/passoft/nexus/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that contributions
+ are welcome :)
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `nexus` for local development.
+
+1. Cone the `nexus` repo::
+
+ $ git clone https://git.passcal.nmt.edu/passoft/nexus.git
+
+3. Install your local copy::
+
+ $ pip install -e .[dev]
+
+4. Create a branch for local development::
+
+ $ git checkout -b name-of-your-bugfix-or-feature
+
+ Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass the
+ tests::
+
+ $ python setup.py test
+6. Commit your changes and push your branch to GitHub::
+
+ $ git add .
+ $ git commit -m "Your detailed description of your changes."
+ $ git push origin name-of-your-bugfix-or-feature
+
+7. Submit a merge request through the Gitlab website.
+
+Pull Request Guidelines
+-----------------------
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+ your new functionality into a function with a docstring, and add the
+ feature to the list in README.rst.
+3. The pull request should work for Python 2.7
+
+Tips
+----
+
+To run a subset of tests::
+ $ python -m unittest tests.test_nexus
+
+Deploying
+---------
+
+A reminder for the maintainers on how to deploy.
+Make sure all your changes are committed (including an entry in HISTORY.rst).
+Then run::
+
+$ git push
+$ git push --tags
+
diff --git a/HISTORY.rst b/HISTORY.rst
new file mode 100644
index 00000000..8a0d38c5
--- /dev/null
+++ b/HISTORY.rst
@@ -0,0 +1,8 @@
+=======
+History
+=======
+
+2018.149 (2018-05-29)
+------------------
+
+* First release on new build system.
diff --git a/LICENSE b/LICENSE
new file mode 100644
index 00000000..86c50abf
--- /dev/null
+++ b/LICENSE
@@ -0,0 +1,33 @@
+GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ StationXML creation GUI
+ Copyright (C) 2018 IRIS PASSCAL
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
+
diff --git a/MANIFEST.in b/MANIFEST.in
new file mode 100644
index 00000000..965b2dda
--- /dev/null
+++ b/MANIFEST.in
@@ -0,0 +1,11 @@
+include AUTHORS.rst
+include CONTRIBUTING.rst
+include HISTORY.rst
+include LICENSE
+include README.rst
+
+recursive-include tests *
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+
+recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif
diff --git a/Makefile b/Makefile
new file mode 100644
index 00000000..5f1b500c
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,89 @@
+.PHONY: clean clean-test clean-pyc clean-build docs help
+.DEFAULT_GOAL := help
+
+define BROWSER_PYSCRIPT
+import os, webbrowser, sys
+
+try:
+ from urllib import pathname2url
+except:
+ from urllib.request import pathname2url
+
+webbrowser.open("file://" + pathname2url(os.path.abspath(sys.argv[1])))
+endef
+export BROWSER_PYSCRIPT
+
+define PRINT_HELP_PYSCRIPT
+import re, sys
+
+for line in sys.stdin:
+ match = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line)
+ if match:
+ target, help = match.groups()
+ print("%-20s %s" % (target, help))
+endef
+export PRINT_HELP_PYSCRIPT
+
+BROWSER := python -c "$$BROWSER_PYSCRIPT"
+
+help:
+ @python -c "$$PRINT_HELP_PYSCRIPT" < $(MAKEFILE_LIST)
+
+clean: clean-build clean-pyc clean-test ## remove all build, test, coverage and Python artifacts
+
+clean-build: ## remove build artifacts
+ rm -fr build/
+ rm -fr dist/
+ rm -fr .eggs/
+ find . -name '*.egg-info' -exec rm -fr {} +
+ find . -name '*.egg' -exec rm -f {} +
+
+clean-pyc: ## remove Python file artifacts
+ find . -name '*.pyc' -exec rm -f {} +
+ find . -name '*.pyo' -exec rm -f {} +
+ find . -name '*~' -exec rm -f {} +
+ find . -name '__pycache__' -exec rm -fr {} +
+
+clean-test: ## remove test and coverage artifacts
+ rm -fr .tox/
+ rm -f .coverage
+ rm -fr htmlcov/
+ rm -fr .pytest_cache
+
+lint: ## check style with flake8
+ flake8 nexus tests
+
+test: ## run tests quickly with the default Python
+ python setup.py test
+
+
+test-all: ## run tests on every Python version with tox
+ tox
+
+coverage: ## check code coverage quickly with the default Python
+ coverage run --source nexus setup.py test
+ coverage report -m
+ coverage html
+ $(BROWSER) htmlcov/index.html
+
+docs: ## generate Sphinx HTML documentation, including API docs
+ rm -f docs/nexus.rst
+ rm -f docs/modules.rst
+ sphinx-apidoc -o docs/ nexus
+ $(MAKE) -C docs clean
+ $(MAKE) -C docs html
+ $(BROWSER) docs/_build/html/index.html
+
+servedocs: docs ## compile the docs watching for changes
+ watchmedo shell-command -p '*.rst' -c '$(MAKE) -C docs html' -R -D .
+
+release: dist ## package and upload a release
+ twine upload dist/*
+
+dist: clean ## builds source and wheel package
+ python setup.py sdist
+ python setup.py bdist_wheel
+ ls -l dist
+
+install: clean ## install the package to the active Python's site-packages
+ python setup.py install
diff --git a/README.rst b/README.rst
new file mode 100644
index 00000000..516dd88c
--- /dev/null
+++ b/README.rst
@@ -0,0 +1,24 @@
+=====
+nexus
+=====
+
+
+StationXML creation GUI
+
+
+* Free software: GNU General Public License v3 (GPLv3)
+
+
+
+Features
+--------
+
+* TODO
+
+Credits
+-------
+
+This package was created with Cookiecutter_ and the `passoft/cookiecutter`_ project template.
+
+.. _Cookiecutter: https://github.com/audreyr/cookiecutter
+.. _`passoft/cookiecutter`: https://git.passcal.nmt.edu/passoft/cookiecutter
diff --git a/cookie/nexus/.editorconfig b/cookie/nexus/.editorconfig
new file mode 100644
index 00000000..d4a2c440
--- /dev/null
+++ b/cookie/nexus/.editorconfig
@@ -0,0 +1,21 @@
+# http://editorconfig.org
+
+root = true
+
+[*]
+indent_style = space
+indent_size = 4
+trim_trailing_whitespace = true
+insert_final_newline = true
+charset = utf-8
+end_of_line = lf
+
+[*.bat]
+indent_style = tab
+end_of_line = crlf
+
+[LICENSE]
+insert_final_newline = false
+
+[Makefile]
+indent_style = tab
diff --git a/cookie/nexus/.gitignore b/cookie/nexus/.gitignore
new file mode 100644
index 00000000..f61ca3b8
--- /dev/null
+++ b/cookie/nexus/.gitignore
@@ -0,0 +1,107 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+# Usually these files are written by a python script from a template
+# before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
+# virtualenv
+.venv
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+#pycharm
+.idea/
+
+.DS_Store
diff --git a/cookie/nexus/.gitlab-ci.yml b/cookie/nexus/.gitlab-ci.yml
new file mode 100644
index 00000000..6524a3fd
--- /dev/null
+++ b/cookie/nexus/.gitlab-ci.yml
@@ -0,0 +1,36 @@
+image: python
+
+# Change pip's cache directory to be inside the project directory since we can
+# only cache local items.
+variables:
+ PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache"
+
+# Pip's cache doesn't store the python packages
+# https://pip.pypa.io/en/stable/reference/pip_install/#caching
+#
+# If you want to also cache the installed packages, you have to install
+# them in a virtualenv and cache it as well.
+cache:
+ paths:
+ - .cache/pip
+
+stages:
+- test
+
+before_script:
+- pip install -e .[dev]
+
+
+python2:
+ image: python:2.7
+ tags:
+ - passoft
+ stage: test
+ script: tox -e py27
+
+python3:
+ image: python:3.6
+ tags:
+ - passoft
+ stage: test
+ script: tox -e py36
diff --git a/cookie/nexus/.gitlab/issue_templates/Bug.md b/cookie/nexus/.gitlab/issue_templates/Bug.md
new file mode 100644
index 00000000..b41e508b
--- /dev/null
+++ b/cookie/nexus/.gitlab/issue_templates/Bug.md
@@ -0,0 +1,15 @@
+* nexus version:
+* Python version:
+* Operating System:
+
+### Description
+
+Describe what you were trying to get done.
+Tell us what happened, what went wrong, and what you expected to happen.
+
+### What I Did
+
+```
+Paste the command(s) you ran and the output.
+If there was a crash, please include the traceback here.
+```
diff --git a/cookie/nexus/AUTHORS.rst b/cookie/nexus/AUTHORS.rst
new file mode 100644
index 00000000..82f4d5a6
--- /dev/null
+++ b/cookie/nexus/AUTHORS.rst
@@ -0,0 +1,13 @@
+=======
+Credits
+=======
+
+Development Lead
+----------------
+
+* IRIS PASSCAL <software-support@passcal.nmt.edu>
+
+Contributors
+------------
+
+None yet. Why not be the first?
diff --git a/cookie/nexus/CONTRIBUTING.rst b/cookie/nexus/CONTRIBUTING.rst
new file mode 100644
index 00000000..58d9d357
--- /dev/null
+++ b/cookie/nexus/CONTRIBUTING.rst
@@ -0,0 +1,114 @@
+.. highlight:: shell
+
+============
+Contributing
+============
+
+Contributions are welcome, and they are greatly appreciated! Every little bit
+helps, and credit will always be given.
+
+You can contribute in many ways:
+
+Types of Contributions
+----------------------
+
+Report Bugs
+~~~~~~~~~~~
+
+Report bugs at https://git.passcal.nmt.edu/passoft/nexus/issues.
+
+If you are reporting a bug, please include:
+
+* Your operating system name and version.
+* Any details about your local setup that might be helpful in troubleshooting.
+* Detailed steps to reproduce the bug.
+
+Fix Bugs
+~~~~~~~~
+
+Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
+wanted" is open to whoever wants to implement it.
+
+Implement Features
+~~~~~~~~~~~~~~~~~~
+
+Look through the GitHub issues for features. Anything tagged with "enhancement"
+and "help wanted" is open to whoever wants to implement it.
+
+Write Documentation
+~~~~~~~~~~~~~~~~~~~
+
+nexus could always use more documentation, whether as part of the
+official nexus docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+Submit Feedback
+~~~~~~~~~~~~~~~
+
+The best way to send feedback is to file an issue at https://git.passcal.nmt.edu/passoft/nexus/issues.
+
+If you are proposing a feature:
+
+* Explain in detail how it would work.
+* Keep the scope as narrow as possible, to make it easier to implement.
+* Remember that this is a volunteer-driven project, and that contributions
+ are welcome :)
+
+Get Started!
+------------
+
+Ready to contribute? Here's how to set up `nexus` for local development.
+
+1. Cone the `nexus` repo::
+
+ $ git clone https://git.passcal.nmt.edu/passoft/nexus.git
+
+3. Install your local copy::
+
+ $ pip install -e .[dev]
+
+4. Create a branch for local development::
+
+ $ git checkout -b name-of-your-bugfix-or-feature
+
+ Now you can make your changes locally.
+
+5. When you're done making changes, check that your changes pass the
+ tests::
+
+ $ python setup.py test
+6. Commit your changes and push your branch to GitHub::
+
+ $ git add .
+ $ git commit -m "Your detailed description of your changes."
+ $ git push origin name-of-your-bugfix-or-feature
+
+7. Submit a merge request through the Gitlab website.
+
+Pull Request Guidelines
+-----------------------
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated. Put
+ your new functionality into a function with a docstring, and add the
+ feature to the list in README.rst.
+3. The pull request should work for Python 2.7
+
+Tips
+----
+
+To run a subset of tests::
+ $ python -m unittest tests.test_nexus
+
+Deploying
+---------
+
+A reminder for the maintainers on how to deploy.
+Make sure all your changes are committed (including an entry in HISTORY.rst).
+Then run::
+
+$ git push
+$ git push --tags
+
diff --git a/cookie/nexus/HISTORY.rst b/cookie/nexus/HISTORY.rst
new file mode 100644
index 00000000..8a0d38c5
--- /dev/null
+++ b/cookie/nexus/HISTORY.rst
@@ -0,0 +1,8 @@
+=======
+History
+=======
+
+2018.149 (2018-05-29)
+------------------
+
+* First release on new build system.
diff --git a/cookie/nexus/LICENSE b/cookie/nexus/LICENSE
new file mode 100644
index 00000000..86c50abf
--- /dev/null
+++ b/cookie/nexus/LICENSE
@@ -0,0 +1,33 @@
+GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ StationXML creation GUI
+ Copyright (C) 2018 IRIS PASSCAL
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
+
diff --git a/cookie/nexus/MANIFEST.in b/cookie/nexus/MANIFEST.in
new file mode 100644
index 00000000..965b2dda
--- /dev/null
+++ b/cookie/nexus/MANIFEST.in
@@ -0,0 +1,11 @@
+include AUTHORS.rst
+include CONTRIBUTING.rst
+include HISTORY.rst
+include LICENSE
+include README.rst
+
+recursive-include tests *
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+
+recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif
diff --git a/cookie/nexus/Makefile b/cookie/nexus/Makefile
new file mode 100644
index 00000000..5f1b500c
--- /dev/null
+++ b/cookie/nexus/Makefile
@@ -0,0 +1,89 @@
+.PHONY: clean clean-test clean-pyc clean-build docs help
+.DEFAULT_GOAL := help
+
+define BROWSER_PYSCRIPT
+import os, webbrowser, sys
+
+try:
+ from urllib import pathname2url
+except:
+ from urllib.request import pathname2url
+
+webbrowser.open("file://" + pathname2url(os.path.abspath(sys.argv[1])))
+endef
+export BROWSER_PYSCRIPT
+
+define PRINT_HELP_PYSCRIPT
+import re, sys
+
+for line in sys.stdin:
+ match = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line)
+ if match:
+ target, help = match.groups()
+ print("%-20s %s" % (target, help))
+endef
+export PRINT_HELP_PYSCRIPT
+
+BROWSER := python -c "$$BROWSER_PYSCRIPT"
+
+help:
+ @python -c "$$PRINT_HELP_PYSCRIPT" < $(MAKEFILE_LIST)
+
+clean: clean-build clean-pyc clean-test ## remove all build, test, coverage and Python artifacts
+
+clean-build: ## remove build artifacts
+ rm -fr build/
+ rm -fr dist/
+ rm -fr .eggs/
+ find . -name '*.egg-info' -exec rm -fr {} +
+ find . -name '*.egg' -exec rm -f {} +
+
+clean-pyc: ## remove Python file artifacts
+ find . -name '*.pyc' -exec rm -f {} +
+ find . -name '*.pyo' -exec rm -f {} +
+ find . -name '*~' -exec rm -f {} +
+ find . -name '__pycache__' -exec rm -fr {} +
+
+clean-test: ## remove test and coverage artifacts
+ rm -fr .tox/
+ rm -f .coverage
+ rm -fr htmlcov/
+ rm -fr .pytest_cache
+
+lint: ## check style with flake8
+ flake8 nexus tests
+
+test: ## run tests quickly with the default Python
+ python setup.py test
+
+
+test-all: ## run tests on every Python version with tox
+ tox
+
+coverage: ## check code coverage quickly with the default Python
+ coverage run --source nexus setup.py test
+ coverage report -m
+ coverage html
+ $(BROWSER) htmlcov/index.html
+
+docs: ## generate Sphinx HTML documentation, including API docs
+ rm -f docs/nexus.rst
+ rm -f docs/modules.rst
+ sphinx-apidoc -o docs/ nexus
+ $(MAKE) -C docs clean
+ $(MAKE) -C docs html
+ $(BROWSER) docs/_build/html/index.html
+
+servedocs: docs ## compile the docs watching for changes
+ watchmedo shell-command -p '*.rst' -c '$(MAKE) -C docs html' -R -D .
+
+release: dist ## package and upload a release
+ twine upload dist/*
+
+dist: clean ## builds source and wheel package
+ python setup.py sdist
+ python setup.py bdist_wheel
+ ls -l dist
+
+install: clean ## install the package to the active Python's site-packages
+ python setup.py install
diff --git a/cookie/nexus/README.rst b/cookie/nexus/README.rst
new file mode 100644
index 00000000..516dd88c
--- /dev/null
+++ b/cookie/nexus/README.rst
@@ -0,0 +1,24 @@
+=====
+nexus
+=====
+
+
+StationXML creation GUI
+
+
+* Free software: GNU General Public License v3 (GPLv3)
+
+
+
+Features
+--------
+
+* TODO
+
+Credits
+-------
+
+This package was created with Cookiecutter_ and the `passoft/cookiecutter`_ project template.
+
+.. _Cookiecutter: https://github.com/audreyr/cookiecutter
+.. _`passoft/cookiecutter`: https://git.passcal.nmt.edu/passoft/cookiecutter
diff --git a/cookie/nexus/docs/Makefile b/cookie/nexus/docs/Makefile
new file mode 100644
index 00000000..3f03c330
--- /dev/null
+++ b/cookie/nexus/docs/Makefile
@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS =
+SPHINXBUILD = python -msphinx
+SPHINXPROJ = nexus
+SOURCEDIR = .
+BUILDDIR = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+ @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+ @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
diff --git a/cookie/nexus/docs/authors.rst b/cookie/nexus/docs/authors.rst
new file mode 100644
index 00000000..e122f914
--- /dev/null
+++ b/cookie/nexus/docs/authors.rst
@@ -0,0 +1 @@
+.. include:: ../AUTHORS.rst
diff --git a/cookie/nexus/docs/conf.py b/cookie/nexus/docs/conf.py
new file mode 100755
index 00000000..59e5a33b
--- /dev/null
+++ b/cookie/nexus/docs/conf.py
@@ -0,0 +1,163 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# nexus documentation build configuration file, created by
+# sphinx-quickstart on Fri Jun 9 13:47:02 2017.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+# If extensions (or modules to document with autodoc) are in another
+# directory, add these directories to sys.path here. If the directory is
+# relative to the documentation root, use os.path.abspath to make it
+# absolute, like shown here.
+#
+import os
+import sys
+sys.path.insert(0, os.path.abspath('..'))
+
+import nexus
+
+# -- General configuration ---------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = '.rst'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'nexus'
+copyright = u"2018, IRIS PASSCAL"
+author = u"IRIS PASSCAL"
+
+# The version info for the project you're documenting, acts as replacement
+# for |version| and |release|, also used in various other places throughout
+# the built documents.
+#
+# The short X.Y version.
+version = nexus.__version__
+# The full version, including alpha/beta/rc tags.
+release = nexus.__version__
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = False
+
+
+# -- Options for HTML output -------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'alabaster'
+
+# Theme options are theme-specific and customize the look and feel of a
+# theme further. For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+
+# -- Options for HTMLHelp output ---------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'nexusdoc'
+
+
+# -- Options for LaTeX output ------------------------------------------
+
+latex_elements = {
+ # The paper size ('letterpaper' or 'a4paper').
+ #
+ # 'papersize': 'letterpaper',
+
+ # The font size ('10pt', '11pt' or '12pt').
+ #
+ # 'pointsize': '10pt',
+
+ # Additional stuff for the LaTeX preamble.
+ #
+ # 'preamble': '',
+
+ # Latex figure (float) alignment
+ #
+ # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass
+# [howto, manual, or own class]).
+latex_documents = [
+ (master_doc, 'nexus.tex',
+ u'nexus Documentation',
+ u'IRIS PASSCAL', 'manual'),
+]
+
+
+# -- Options for manual page output ------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+ (master_doc, 'nexus',
+ u'nexus Documentation',
+ [author], 1)
+]
+
+
+# -- Options for Texinfo output ----------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+# dir menu entry, description, category)
+texinfo_documents = [
+ (master_doc, 'nexus',
+ u'nexus Documentation',
+ author,
+ 'nexus',
+ 'One line description of project.',
+ 'Miscellaneous'),
+]
+
+
+
diff --git a/cookie/nexus/docs/contributing.rst b/cookie/nexus/docs/contributing.rst
new file mode 100644
index 00000000..e582053e
--- /dev/null
+++ b/cookie/nexus/docs/contributing.rst
@@ -0,0 +1 @@
+.. include:: ../CONTRIBUTING.rst
diff --git a/cookie/nexus/docs/history.rst b/cookie/nexus/docs/history.rst
new file mode 100644
index 00000000..25064996
--- /dev/null
+++ b/cookie/nexus/docs/history.rst
@@ -0,0 +1 @@
+.. include:: ../HISTORY.rst
diff --git a/cookie/nexus/docs/index.rst b/cookie/nexus/docs/index.rst
new file mode 100644
index 00000000..5ae2cbf4
--- /dev/null
+++ b/cookie/nexus/docs/index.rst
@@ -0,0 +1,20 @@
+Welcome to nexus's documentation!
+======================================
+
+.. toctree::
+ :maxdepth: 2
+ :caption: Contents:
+
+ readme
+ installation
+ usage
+ modules
+ contributing
+ authors
+ history
+
+Indices and tables
+==================
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
diff --git a/cookie/nexus/docs/installation.rst b/cookie/nexus/docs/installation.rst
new file mode 100644
index 00000000..9d58fcd4
--- /dev/null
+++ b/cookie/nexus/docs/installation.rst
@@ -0,0 +1,51 @@
+.. highlight:: shell
+
+============
+Installation
+============
+
+
+Stable release
+--------------
+
+To install nexus, run this command in your terminal:
+
+.. code-block:: console
+
+ $ pip install nexus
+
+This is the preferred method to install nexus, as it will always install the most recent stable release.
+
+If you don't have `pip`_ installed, this `Python installation guide`_ can guide
+you through the process.
+
+.. _pip: https://pip.pypa.io
+.. _Python installation guide: http://docs.python-guide.org/en/latest/starting/installation/
+
+
+From sources
+------------
+
+The sources for nexus can be downloaded from the `Github repo`_.
+
+You can either clone the public repository:
+
+.. code-block:: console
+
+ $ git clone https://git.passcal.nmt.edu/passoft/nexus
+
+Or download the `tarball`_:
+
+.. code-block:: console
+
+ $ curl -OL https://git.passcal.nmt.edu/passoft/nexus/tarball/master
+
+Once you have a copy of the source, you can install it with:
+
+.. code-block:: console
+
+ $ python setup.py install
+
+
+.. _Github repo: https://git.passcal.nmt.edu/passoft/nexus
+.. _tarball: https://git.passcal.nmt.edu/passoft/nexus/tarball/master
diff --git a/cookie/nexus/docs/make.bat b/cookie/nexus/docs/make.bat
new file mode 100644
index 00000000..bdff7250
--- /dev/null
+++ b/cookie/nexus/docs/make.bat
@@ -0,0 +1,36 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+ set SPHINXBUILD=python -msphinx
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+set SPHINXPROJ=nexus
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+ echo.
+ echo.The Sphinx module was not found. Make sure you have Sphinx installed,
+ echo.then set the SPHINXBUILD environment variable to point to the full
+ echo.path of the 'sphinx-build' executable. Alternatively you may add the
+ echo.Sphinx directory to PATH.
+ echo.
+ echo.If you don't have Sphinx installed, grab it from
+ echo.http://sphinx-doc.org/
+ exit /b 1
+)
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
+
+:end
+popd
diff --git a/cookie/nexus/docs/readme.rst b/cookie/nexus/docs/readme.rst
new file mode 100644
index 00000000..72a33558
--- /dev/null
+++ b/cookie/nexus/docs/readme.rst
@@ -0,0 +1 @@
+.. include:: ../README.rst
diff --git a/cookie/nexus/docs/usage.rst b/cookie/nexus/docs/usage.rst
new file mode 100644
index 00000000..f570c8de
--- /dev/null
+++ b/cookie/nexus/docs/usage.rst
@@ -0,0 +1,7 @@
+=====
+Usage
+=====
+
+To use nexus in a project::
+
+ import nexus
diff --git a/cookie/nexus/nexus/__init__.py b/cookie/nexus/nexus/__init__.py
new file mode 100644
index 00000000..d21a53fd
--- /dev/null
+++ b/cookie/nexus/nexus/__init__.py
@@ -0,0 +1,7 @@
+# -*- coding: utf-8 -*-
+
+"""Top-level package for nexus."""
+
+__author__ = """IRIS PASSCAL"""
+__email__ = 'software-support@passcal.nmt.edu'
+__version__ = '2018.149'
diff --git a/cookie/nexus/setup.cfg b/cookie/nexus/setup.cfg
new file mode 100644
index 00000000..96f1818f
--- /dev/null
+++ b/cookie/nexus/setup.cfg
@@ -0,0 +1,22 @@
+[bumpversion]
+current_version = 2018.149
+commit = True
+tag = True
+
+[bumpversion:file:setup.py]
+search = version='{current_version}'
+replace = version='{new_version}'
+
+[bumpversion:file:nexus/__init__.py]
+search = __version__ = '{current_version}'
+replace = __version__ = '{new_version}'
+
+[bdist_wheel]
+universal = 1
+
+[flake8]
+exclude = docs
+
+[aliases]
+# Define setup.py command aliases here
+
diff --git a/cookie/nexus/setup.py b/cookie/nexus/setup.py
new file mode 100644
index 00000000..b555ddd6
--- /dev/null
+++ b/cookie/nexus/setup.py
@@ -0,0 +1,56 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""The setup script."""
+
+from setuptools import setup, find_packages
+
+with open('README.rst') as readme_file:
+ readme = readme_file.read()
+
+with open('HISTORY.rst') as history_file:
+ history = history_file.read()
+
+
+setup(
+ author="IRIS PASSCAL",
+ author_email='software-support@passcal.nmt.edu',
+ classifiers=[
+ 'Development Status :: 5 - Production/Stable',
+ 'Intended Audience :: Developers',
+ 'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+ 'Natural Language :: English',
+ 'Programming Language :: Python :: 2.7',
+ ],
+ description="StationXML creation GUI",
+ entry_points={
+ 'console_scripts': [
+ 'nexus=nexus.nexus:main',
+ ],
+ },
+ install_requires=[],
+ setup_requires = [],
+ extras_require={
+ 'dev': [
+ 'pip',
+ 'bumpversion',
+ 'wheel',
+ 'watchdog',
+ 'flake8',
+ 'tox',
+ 'coverage',
+ 'Sphinx',
+ 'twine',
+ ]
+ },
+ license="GNU General Public License v3",
+ long_description=readme + '\n\n' + history,
+ include_package_data=True,
+ keywords='nexus',
+ name='nexus',
+ packages=find_packages(include=['nexus']),
+ test_suite='tests',
+ url='https://git.passcal.nmt.edu/passoft/nexus',
+ version='2018.149',
+ zip_safe=False,
+)
diff --git a/cookie/nexus/tests/__init__.py b/cookie/nexus/tests/__init__.py
new file mode 100644
index 00000000..1266ab3e
--- /dev/null
+++ b/cookie/nexus/tests/__init__.py
@@ -0,0 +1,3 @@
+# -*- coding: utf-8 -*-
+
+"""Unit test package for nexus."""
diff --git a/cookie/nexus/tests/test_nexus.py b/cookie/nexus/tests/test_nexus.py
new file mode 100644
index 00000000..d9ae8c74
--- /dev/null
+++ b/cookie/nexus/tests/test_nexus.py
@@ -0,0 +1,28 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""Tests for `nexus` package."""
+
+import unittest
+import sys
+
+try:
+ import nexus
+except ImportError:
+ pass
+
+class TestNexus(unittest.TestCase):
+ """Tests for `nexus` package."""
+
+ def setUp(self):
+ """Set up test fixtures, if any."""
+
+ def tearDown(self):
+ """Tear down test fixtures, if any."""
+
+ def test_import(self):
+ if 'nexus' in sys.modules:
+ self.assert_(True, "nexus loaded")
+ else:
+ self.fail()
+
diff --git a/cookie/nexus/tox.ini b/cookie/nexus/tox.ini
new file mode 100644
index 00000000..5926ad56
--- /dev/null
+++ b/cookie/nexus/tox.ini
@@ -0,0 +1,19 @@
+[tox]
+envlist = py27, py36 flake8
+
+[travis]
+python =
+ 2.7: py27
+ 3.6: py36
+
+[testenv:flake8]
+basepython = python
+deps = flake8
+commands = flake8 nexus
+
+[testenv]
+setenv =
+ PYTHONPATH = {toxinidir}
+commands=python setup.py test
+
+
diff --git a/docs/Makefile b/docs/Makefile
new file mode 100644
index 00000000..3f03c330
--- /dev/null
+++ b/docs/Makefile
@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line.
+SPHINXOPTS =
+SPHINXBUILD = python -msphinx
+SPHINXPROJ = nexus
+SOURCEDIR = .
+BUILDDIR = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+ @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+ @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
diff --git a/docs/authors.rst b/docs/authors.rst
new file mode 100644
index 00000000..e122f914
--- /dev/null
+++ b/docs/authors.rst
@@ -0,0 +1 @@
+.. include:: ../AUTHORS.rst
diff --git a/docs/conf.py b/docs/conf.py
new file mode 100755
index 00000000..59e5a33b
--- /dev/null
+++ b/docs/conf.py
@@ -0,0 +1,163 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+# nexus documentation build configuration file, created by
+# sphinx-quickstart on Fri Jun 9 13:47:02 2017.
+#
+# This file is execfile()d with the current directory set to its
+# containing dir.
+#
+# Note that not all possible configuration values are present in this
+# autogenerated file.
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+# If extensions (or modules to document with autodoc) are in another
+# directory, add these directories to sys.path here. If the directory is
+# relative to the documentation root, use os.path.abspath to make it
+# absolute, like shown here.
+#
+import os
+import sys
+sys.path.insert(0, os.path.abspath('..'))
+
+import nexus
+
+# -- General configuration ---------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+#
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode']
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
+#
+# source_suffix = ['.rst', '.md']
+source_suffix = '.rst'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'nexus'
+copyright = u"2018, IRIS PASSCAL"
+author = u"IRIS PASSCAL"
+
+# The version info for the project you're documenting, acts as replacement
+# for |version| and |release|, also used in various other places throughout
+# the built documents.
+#
+# The short X.Y version.
+version = nexus.__version__
+# The full version, including alpha/beta/rc tags.
+release = nexus.__version__
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#
+# This is also used if you do content translation via gettext catalogs.
+# Usually you set "language" from the command line for these cases.
+language = None
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This patterns also effect to html_static_path and html_extra_path
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# If true, `todo` and `todoList` produce output, else they produce nothing.
+todo_include_todos = False
+
+
+# -- Options for HTML output -------------------------------------------
+
+# The theme to use for HTML and HTML Help pages. See the documentation for
+# a list of builtin themes.
+#
+html_theme = 'alabaster'
+
+# Theme options are theme-specific and customize the look and feel of a
+# theme further. For a list of options available for each theme, see the
+# documentation.
+#
+# html_theme_options = {}
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ['_static']
+
+
+# -- Options for HTMLHelp output ---------------------------------------
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = 'nexusdoc'
+
+
+# -- Options for LaTeX output ------------------------------------------
+
+latex_elements = {
+ # The paper size ('letterpaper' or 'a4paper').
+ #
+ # 'papersize': 'letterpaper',
+
+ # The font size ('10pt', '11pt' or '12pt').
+ #
+ # 'pointsize': '10pt',
+
+ # Additional stuff for the LaTeX preamble.
+ #
+ # 'preamble': '',
+
+ # Latex figure (float) alignment
+ #
+ # 'figure_align': 'htbp',
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass
+# [howto, manual, or own class]).
+latex_documents = [
+ (master_doc, 'nexus.tex',
+ u'nexus Documentation',
+ u'IRIS PASSCAL', 'manual'),
+]
+
+
+# -- Options for manual page output ------------------------------------
+
+# One entry per manual page. List of tuples
+# (source start file, name, description, authors, manual section).
+man_pages = [
+ (master_doc, 'nexus',
+ u'nexus Documentation',
+ [author], 1)
+]
+
+
+# -- Options for Texinfo output ----------------------------------------
+
+# Grouping the document tree into Texinfo files. List of tuples
+# (source start file, target name, title, author,
+# dir menu entry, description, category)
+texinfo_documents = [
+ (master_doc, 'nexus',
+ u'nexus Documentation',
+ author,
+ 'nexus',
+ 'One line description of project.',
+ 'Miscellaneous'),
+]
+
+
+
diff --git a/docs/contributing.rst b/docs/contributing.rst
new file mode 100644
index 00000000..e582053e
--- /dev/null
+++ b/docs/contributing.rst
@@ -0,0 +1 @@
+.. include:: ../CONTRIBUTING.rst
diff --git a/docs/history.rst b/docs/history.rst
new file mode 100644
index 00000000..25064996
--- /dev/null
+++ b/docs/history.rst
@@ -0,0 +1 @@
+.. include:: ../HISTORY.rst
diff --git a/docs/index.rst b/docs/index.rst
new file mode 100644
index 00000000..5ae2cbf4
--- /dev/null
+++ b/docs/index.rst
@@ -0,0 +1,20 @@
+Welcome to nexus's documentation!
+======================================
+
+.. toctree::
+ :maxdepth: 2
+ :caption: Contents:
+
+ readme
+ installation
+ usage
+ modules
+ contributing
+ authors
+ history
+
+Indices and tables
+==================
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
diff --git a/docs/installation.rst b/docs/installation.rst
new file mode 100644
index 00000000..9d58fcd4
--- /dev/null
+++ b/docs/installation.rst
@@ -0,0 +1,51 @@
+.. highlight:: shell
+
+============
+Installation
+============
+
+
+Stable release
+--------------
+
+To install nexus, run this command in your terminal:
+
+.. code-block:: console
+
+ $ pip install nexus
+
+This is the preferred method to install nexus, as it will always install the most recent stable release.
+
+If you don't have `pip`_ installed, this `Python installation guide`_ can guide
+you through the process.
+
+.. _pip: https://pip.pypa.io
+.. _Python installation guide: http://docs.python-guide.org/en/latest/starting/installation/
+
+
+From sources
+------------
+
+The sources for nexus can be downloaded from the `Github repo`_.
+
+You can either clone the public repository:
+
+.. code-block:: console
+
+ $ git clone https://git.passcal.nmt.edu/passoft/nexus
+
+Or download the `tarball`_:
+
+.. code-block:: console
+
+ $ curl -OL https://git.passcal.nmt.edu/passoft/nexus/tarball/master
+
+Once you have a copy of the source, you can install it with:
+
+.. code-block:: console
+
+ $ python setup.py install
+
+
+.. _Github repo: https://git.passcal.nmt.edu/passoft/nexus
+.. _tarball: https://git.passcal.nmt.edu/passoft/nexus/tarball/master
diff --git a/docs/make.bat b/docs/make.bat
new file mode 100644
index 00000000..bdff7250
--- /dev/null
+++ b/docs/make.bat
@@ -0,0 +1,36 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+ set SPHINXBUILD=python -msphinx
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+set SPHINXPROJ=nexus
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+ echo.
+ echo.The Sphinx module was not found. Make sure you have Sphinx installed,
+ echo.then set the SPHINXBUILD environment variable to point to the full
+ echo.path of the 'sphinx-build' executable. Alternatively you may add the
+ echo.Sphinx directory to PATH.
+ echo.
+ echo.If you don't have Sphinx installed, grab it from
+ echo.http://sphinx-doc.org/
+ exit /b 1
+)
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
+
+:end
+popd
diff --git a/docs/readme.rst b/docs/readme.rst
new file mode 100644
index 00000000..72a33558
--- /dev/null
+++ b/docs/readme.rst
@@ -0,0 +1 @@
+.. include:: ../README.rst
diff --git a/docs/usage.rst b/docs/usage.rst
new file mode 100644
index 00000000..f570c8de
--- /dev/null
+++ b/docs/usage.rst
@@ -0,0 +1,7 @@
+=====
+Usage
+=====
+
+To use nexus in a project::
+
+ import nexus
diff --git a/nexus/__init__.py b/nexus/__init__.py
index e69de29b..d21a53fd 100644
--- a/nexus/__init__.py
+++ b/nexus/__init__.py
@@ -0,0 +1,7 @@
+# -*- coding: utf-8 -*-
+
+"""Top-level package for nexus."""
+
+__author__ = """IRIS PASSCAL"""
+__email__ = 'software-support@passcal.nmt.edu'
+__version__ = '2018.149'
diff --git a/setup.cfg b/setup.cfg
new file mode 100644
index 00000000..96f1818f
--- /dev/null
+++ b/setup.cfg
@@ -0,0 +1,22 @@
+[bumpversion]
+current_version = 2018.149
+commit = True
+tag = True
+
+[bumpversion:file:setup.py]
+search = version='{current_version}'
+replace = version='{new_version}'
+
+[bumpversion:file:nexus/__init__.py]
+search = __version__ = '{current_version}'
+replace = __version__ = '{new_version}'
+
+[bdist_wheel]
+universal = 1
+
+[flake8]
+exclude = docs
+
+[aliases]
+# Define setup.py command aliases here
+
diff --git a/setup.py b/setup.py
new file mode 100644
index 00000000..b555ddd6
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,56 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""The setup script."""
+
+from setuptools import setup, find_packages
+
+with open('README.rst') as readme_file:
+ readme = readme_file.read()
+
+with open('HISTORY.rst') as history_file:
+ history = history_file.read()
+
+
+setup(
+ author="IRIS PASSCAL",
+ author_email='software-support@passcal.nmt.edu',
+ classifiers=[
+ 'Development Status :: 5 - Production/Stable',
+ 'Intended Audience :: Developers',
+ 'License :: OSI Approved :: GNU General Public License v3 (GPLv3)',
+ 'Natural Language :: English',
+ 'Programming Language :: Python :: 2.7',
+ ],
+ description="StationXML creation GUI",
+ entry_points={
+ 'console_scripts': [
+ 'nexus=nexus.nexus:main',
+ ],
+ },
+ install_requires=[],
+ setup_requires = [],
+ extras_require={
+ 'dev': [
+ 'pip',
+ 'bumpversion',
+ 'wheel',
+ 'watchdog',
+ 'flake8',
+ 'tox',
+ 'coverage',
+ 'Sphinx',
+ 'twine',
+ ]
+ },
+ license="GNU General Public License v3",
+ long_description=readme + '\n\n' + history,
+ include_package_data=True,
+ keywords='nexus',
+ name='nexus',
+ packages=find_packages(include=['nexus']),
+ test_suite='tests',
+ url='https://git.passcal.nmt.edu/passoft/nexus',
+ version='2018.149',
+ zip_safe=False,
+)
diff --git a/tests/__init__.py b/tests/__init__.py
new file mode 100644
index 00000000..1266ab3e
--- /dev/null
+++ b/tests/__init__.py
@@ -0,0 +1,3 @@
+# -*- coding: utf-8 -*-
+
+"""Unit test package for nexus."""
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diff --git a/tests/test_nexus.py b/tests/test_nexus.py
new file mode 100644
index 00000000..d9ae8c74
--- /dev/null
+++ b/tests/test_nexus.py
@@ -0,0 +1,28 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""Tests for `nexus` package."""
+
+import unittest
+import sys
+
+try:
+ import nexus
+except ImportError:
+ pass
+
+class TestNexus(unittest.TestCase):
+ """Tests for `nexus` package."""
+
+ def setUp(self):
+ """Set up test fixtures, if any."""
+
+ def tearDown(self):
+ """Tear down test fixtures, if any."""
+
+ def test_import(self):
+ if 'nexus' in sys.modules:
+ self.assert_(True, "nexus loaded")
+ else:
+ self.fail()
+
diff --git a/tox.ini b/tox.ini
new file mode 100644
index 00000000..5926ad56
--- /dev/null
+++ b/tox.ini
@@ -0,0 +1,19 @@
+[tox]
+envlist = py27, py36 flake8
+
+[travis]
+python =
+ 2.7: py27
+ 3.6: py36
+
+[testenv:flake8]
+basepython = python
+deps = flake8
+commands = flake8 nexus
+
+[testenv]
+setenv =
+ PYTHONPATH = {toxinidir}
+commands=python setup.py test
+
+
--
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